My first advice to you is retake the LSAT. A 166 or 167 will completely change your application. Think of it as the difference between a medium chance at any t13 vs. huge scholarships at NYU, Duke, and Berkeley.
There are a very, very minute amount of data points for applications like yours. Here is an extremely rough approximation of how to may do, based on numbers/URM status alone (
3.5-3.65, 162-164, URM only).
- [+] Spoiler

I imagine you'll overperform your numbers. Your work experience, your diversity, and your obviously intellectual writing ability and attention to detail are gonna take you far in your admissions cycle.
1. I would definitely find a way to explain the WFs. However, re: details I would edit down.
Including the first scenario (I am sorry you had to deal with this, it sound awful.) would definitely help explain your depression and subsequent grade lapses.
Although you were obviously not at fault and were the victim of the second scenario, I'd caution against including overly specific about being framed by a closeted conservative student govt. president and becoming a "a pariah on campus." I imagine this was an extremely difficult time of your life. But don't open that door up for adcomms to start questioning A. your ability to deal with adversity or B. the truth in your story. Adcomms are not all believers of victims. I would also advise against any outright knocks on religion, i.e. babble.
2. I think your approach to the intersectionality of your identities is the exact target you should aim for, and you are correcting in believing that adcomms will not approach URM applicants with an intersectional lens unless this is demonstrated by the applicant. Certainly checking both the LGBTQ box and racial minority box on your application form would be advantageous, but a good personal or diversity statement about the intersection of the two would probably be invaluable.
3. Why would you disclose that Michigan is your top choice to any school besides Michigan?
4. See above re: rough estimates. You can be confident that you will get into at least a couple t13 schools, some with $. Obviously blanket the t14. Do
not ED UMich.
Take the September LSAT.